蛋白纯化试剂盒

Crystallization of Kinesin Family Motor Proteins

Motorproteinsofseveralkinesinfamilygroupshavenowbeencrystallized:monomericKinesin-1motordomainsfromhuman,ratandNeurospora(Kulletal.,1996;Sacketal.,1997;Songetal.,2001)anddimericratKinesin-1(twomotordomainsconnectedbyashortcoiled-coil;Kozielskietal.,1997);theKinesin-14(formerlyC-terminalmotor)proteinsDrosophilaNcdinitsmonomericanddimericforms(Sablin&Fletterick,1995,Sablinetal.,1996,1998;Kozielskietal.,1997;Yunetal.,2003),yeastKAR3(monomer)(Gulicketal.,1998;Yunetal.,2001)andthreeKAR3mutants(Yunetal.,2001),andKCBP(Vinogradovaetal.,2004);theKinesin-3(formerlyUnc104/KIF1)motor,KIF1Aboundtodifferentnucleotides(KIF1A-ADP,KIF1A-AMPPCP,KIF1A-ADP-Vi,KIF1A-AlFx)(Kikkawaetal.,2001;Nittaetal.,2004);theKinesin-5(formerlyBimC)motor,monomericEg5(Turneretal.,2001);andtheKinesin-13(formerlyMCAK)motor,PfKinI(Shipleyetal.,2004).Thefollowingtablessummarizethecrystallizationconditionsandsomeofthecrystalparameters.
CrystalsofmonomericratKinesin-1
Table1:Crystallizationconditionsforkinesinmotorproteinconstructs
ConstructMethodConditionsReferences
HumanKinesin-1hK349Sittingdrop4°C5mg/mlproteinin50mMNa-acetate,pH4.6,75mMKCl,3.5%(w/v)PEG4000,2.5mMATP,10mMMgCl2Reservoir:100mMNa-acetatepH4.6,150mMKCl,7%PEG4000,5mMATP,20mMMgCl2Kulletal.,1996
Ncd335-700SittingdropRoomtemperature7mg/mlproteinin10mMPipes,pH7.2,100mMNaCl,1mMEGTA,1mMDTT,7%(w/v)PEG4000,0.3%octyl-ß-D-glucoside,2mMATP,10mMMgCl2Reservoir:15%(w/v)PEG4000,60mMNaClequallybufferedSablin&Fletterick,1995Sablinetal.,1996
Ncd293-700Hangingdrop18°C17mg/mlproteinin20mMHEPESpH7.4,200mMNaCl,10mMMgCl2,2mMDTTwaspre-incubatedwith4mMAMP*PNPorATPfor2hoursCrystalsgrewin11%PEG8000,0.8MNaCl,50mMNa2H2PO4,pH6.8,7mMDTTYunetal.,2003
RatKinesin-1rK354HangingdropRoomtemperature9-14mg/mlprotein20mMPIPESpH7.5,50mMKCl,1mMEGTA,1mMDTT,0.9MLi2SO4Reservoir:20mMPIPESpH7.5,1.8MLi2SO4or15mg/mlproteinin10mMPIPESpH7.5,50mMNaCl,1mMEGTA,1mMDTT,0.5mMNaN3,0.9M(NH4)2SO4Reservoir:1.8M(NH4)2SO4,50mMNaClKozielskietal.,1997aSacketal.,1997
RatKinesin-1rK379HangingdropRoomtemperature15mg/mlprotein10mMPIPESpH7.5,200mMNaCl,1mMEGTA,1mMDTT,0.5mMNaN3,0.8M(NH4)2SO4Reservoir:1.6M(NH4)2SO4,200mMNaClKozielskietal.1997a,b
Kar3383-729MicrobatchRoomtemperature11mg/mlprotein10mMHEPESpH7.5,150mMNaCl,1mMDTT,1mMMgCl2,0.2mMNaN3,2mMADPcombined1:1with22%methyletherPEG2000,100mMNaCl,2%ethyleneglycol,50mMHEPESpH7.0Gulicketal.,1998
Ncd281-700Sittingdrop4°C20mg/mlproteinin20mMHEPESpH7.5,100mMNaCl,1mMEGTA,0.7MLi2S04,2mMADP,10mMMgCl2Reservoir:20mMHEPESpH7.5,1.4MLi2SO4,1mMEGTA,1mMDTT,10mMMgCl2Sablinetal.,1998
Ncd295-700HangingdropRoomtemperature5mg/mlproteinin25mMNa2PO4,pH6.8,6.8%PEG8000,1MNaCl,2mMATP,3.5mMDTT,10mMMgCl2Reservoir:25mMNa2PO4pH6.8,13.5%PEG8000,2MNaCl,7mMDTTKozielskietal.,1999
Eg51-368HsKSPSittingDrop4°C5mg/mlproteinin9%PEG-3350,50mMPIPESpH6.8,100mMNaNO3Reservoir:18%PEG-3350,100mMPIPESpH6.8,200mMNaNO3Imperfectcrystalswerecrushedandusedtoseed5mg/mlEg5in7.5%PEG-3350,50mMMESpH5.6,100mMNaNO3Reservoir:15%PEG-3350,100mMMESpH5.6,200mMNaNO3Turneretal.,2001
KIF1A-ADPVapordiffusion2microlitersofprotein(15mg/ml)+2microlitersofreservoirbuffer(RB1)composedof30%w/vPEG4000,100mMTris-HClpH8.5,200mMsodiumacetate,8%w/vsucrose,4mMADP,10mMMgCl2,equilibratedagainstRB1for5dKikkawaetal.,2001
KIF1A-AMPPCP(soaked)Vapordiffusion15mg/mlprotein+reservoirbuffer(RB2)composedof27%w/vPEG4000,100mMMES-NaOHpH6.5,200mMsodiumacetate,thensoakedinRB2+20mMAMPPCP+40mMMgCl2for24hrs.Kikkawaetal.,2001
KIF1A-AMPPCP(co-crystalized)Vapordiffusion15mg/mlproteinco-crystalizedwith5mMAMPPCP+20mMMgCl2inreservoirbuffer(RB3)composedof30%w/vPEG4000,100mMTris-HClpH8.5,200mMsodiumacetateKikkawaetal.,2001
Nkin1-355SittingDrop19°C7.5-15mg/mlproteinin20mMTrispH7.9,5mMMgCl2,0.5mMADPReservoir:17.5%PEGMME2000,100mMHEPESpH6.5-7.5,3%glycerolSongetal.,2001
Kar3+N11(WT)HangingDrop18°C2microlitersofprotein(15mg/ml)+2microlitersofwellsolutioncontaining20-26%PEG2000ME,0.2MNaCl,50mMHEPESbufferpH7.0-8.0Yunetal.,2001
Kar3N650KHangingDrop18°C2microlitersofprotein(15mg/ml)+2microlitersofwellsolutioncontaining20-26%PEG2000ME,0.2MNaCl,50mMHEPESbufferpH7.0-8.0Yunetal.,2001
Kar3R598AHangingDrop4°C2microlitersofprotein(15mg/ml)+2microlitersofwellsolutioncontaining20-26%PEG2000ME,0.2MNaCl,50mMHEPESbufferpH7.0-8.0Yunetal.,2001
Kar3E631AHangingDrop4°C2microlitersofprotein(15mg/ml)+2microlitersofwellsolutioncontaining20-26%PEG2000ME,0.2MNaCl,50mMHEPESbufferpH7.0-8.0Yunetal.,2001
Ncd293-70018°C17mg/mlproteinin20mMHEPESpH7.4,200mMNaCl,10mMMgCl2and2mMDTT,pre-incubatedwith4mMAMPPNPorATPfor2hCrystalsgrewin11.0%PEG8000,0.8MNaCl,50mMNa2HPO4/NaH2PO4(pH6.8)and7mMDTTat18°CYunetal.,2003
KIF1AVapordiffusionat20°Cfor24hAMPPNP:27%w/vPEG4000,100mMTris-HClpH8.5,200mMsodiumacetateand3%w/vxylitolwithafinalconcentrationof5mMAMPPNPand1mMMgCl2ADP-AlFx:29%w/vPEG4000,100mMTris-HClpH8.5,200mMsodiumacetateand3%w/vxylitolwithafinalconcentrationof1mMADP,1mMMgCl2and1mMAlF3ADP-Vi;28%w/vPEG4000,100mMTris-HClpH8.5,200mMsodiumacetateand3%w/vxylitolwithafinalconcentrationof1mMADP,1mMMgCl2and1mMNaVO4Nittaetal.,2004
KCBP884-1252Sittingdropvapordiffusionat4°C10mg/mLproteinin50mMTris,pH7.5,50mMNaCl,2mMMgCl2,1mMEGTA,1mMATP,1mMTris(2-carboxyethyl)-phosphineReservoir:20%polyethyleneglycol3350in0.2Mdi-sodiumhydrogenphosphate,pH9.1Vinogradovaetal.,2004
KinISittingdrop4°C10-20mg/mlproteinReservoir:1.4-1.8Mammoniumsulfate,100mMsodiumacetate(pH5.0),200mMsodiumnitrateShipleyetal.,2004
Table2:Crystallographicparameters
ConstructSpacegroupUnitcellResolutionStructuraldeterminationSpecialFeatures
hK349PDB:1BG2P212121a=48.54Åb=67.94Åc=112.95Å1.8ÅMultipleisomorphousreplacement
rK354PDB:2KINP212121a=71.56Åb=73.67Åc=74.13Å1.9ÅMolecularreplacement
rK379PDB:3KINP212121a=72.2Åb=91.9Åc=141.7Å3.0ÅMultipleisomorphousreplacement
Kar3382-729PDB:3KARP21a=44.1Åb=81.2Åc=48.3Åß=105.8°2.3ÅMolecularreplacementandphasesofthreeheavyatomderivatives
Ncd335-700CoordinatesI222a=127.1Åb=122.3Åc=68.0Å2.5ÅMultipleisomorphousreplacement
Ncd281-700PDB:2NCDP6122a=123.0Åb=123.0Åc=121.1Å2.5ÅMolecularreplacement
Ncd295-700PDB:1CZ7C2221a=116.19Åb=148.83Åc=261.52Å2.9ÅMolecularreplacementandphasesofthreeheavyatomderivatives
Eg5PDB:1II6P21a=53.08Åb=78.59Åc=94.15Åß=93.84°2.1ÅMolecularreplacement
KIF1A-ADPPDB:1I5SP212121a=41.67Åb=51.92Åc=157.06Å2.2ÅMolecularreplacement
KIF1A-AMPPCP(soaked)PDB:1I6IP212121a=41.99Åb=56.40Åc=156.12Å2.0ÅMolecularreplacementMotorboundtoAMPPCP
KIF1A-AMPPCP(co-crystalized)PDB:1IA0P212121a=42.42Åb=55.43Åc=157.27Å1.9ÅMolecularreplacementMotorboundtoAMPPCP
Nkin1-355PDB:1GOJP212121a=51.97Åb=72.73Åc=84.93Å2.3ÅMolecularreplacement
Kar3+N11(WT)PDB:1F9TP21a=43.6Åb=78.8Åc=47.2Åß=105.0°1.5ÅMolecularreplacement
Kar3N650KPDB:1F9UP21a=43.6Åb=78.0Åc=47.3Åß=105.1°1.7ÅMolecularreplacement
Kar3R598APDB:1F9VP21a=43.9Åb=77.4Åc=47.7Åß=105.9°1.3ÅMolecularreplacement
Kar3E631APDB:1F9WP43a=62.9Åc=153.6Å2.5ÅMolecularreplacement
Ncd293-700PDB:1N6MC2a=162.6Åb=66.6Åc=94.8Å2.5ÅMolecularreplacementRotationofstalkby75°
KIF1AAMPPNP:PDB:1VFVPDB:1VFWADP-AlFx:PDB:1VFXADP-Vi:PDB:1VFZAMPPNP1:P212121AMPPNP2:P212121ADP-AlFx:P212121ADP-Vi:P212121AMPPNP1:a=42.6Åb=55.2Åc=157.0ÅAMPPNP2:a=42.6Åb=55.5Åc=156.7ÅADP-AlFx:a=41.9Åb=54.6Åc=156.8ÅADP-Vi:a=41.5Åb=51.8Åc=157.0ÅAMPPNP1:1.85ÅAMPPNP2:2.2ÅADP-AlFx:2.6ÅADP-Vi:2.2ÅMolecularreplacementMotorboundtoAMPPNP,ADP-AlFxorADP-Vi
KCBPPDB:1SDMP21212a=95.7Åb=85.3Åc=44.5Å2.3ÅMolecularreplacement
KinIPDB:1RY6P3221a=105.6Åc=84.8Å1.6ÅMolecularreplacementNonucleotideboundtomotor

ContributedbyJ.Muller,J.KullandE.Mandelkow

IfyouusemethodsfromtheKinesinsite,weaskthatyoucitetheKinesinHomePageandauthors,ortheappropriatesourcepublicationinyourwork.

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