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Exosomal long noncoding RNA HOTTIP as potential novel diagnostic and prognostic biomarker test for gastric cancer | Molecular Cancer | Full Text
Abstract
LongnoncodingRNAHOTTIPplaysimportantrolesinthegenerationandprogressionofhumancancers.Exosomesparticipateincellularcommunicationbytransmittingmolecularsbetweencellsandareregardedassuitablecandidatesfornon-invasivediagnosis.However,theexistenceofHOTTIPinthecirculatingexosomesandthepotentialrolesofexosomalHOTTIPingastriccancer(GC)waspoorlyunderstood.ThisstudyaimsatinvestigatingtheclinicalrolesofexosomalHOTTIPinGC.SerumexosomalHOTTIPfrom246subjects(126GCpatientsand120healthypeople)weredetectedbyreversetranscriptionreal-timequantitativepolymerasechainreaction(RT-qPCR).OurresultsshowedthatexpressionlevelsofexosomalHOTTIPweretypicallyupregulatedinGCthaninnormalcontrol(P鈥?lt;鈥?.001).Anditsexpressionlevelsweresignificantlycorrelatedwithinvasiondepth(P鈥?鈥?.0298)andTNMstage(P鈥?lt;鈥?.001).TheAUCforexosomalHOTTIPwas0.827,whichdemonstratedahigherdiagnosticcapABIlitythanCEA,CA19鈥?andCA72鈥?(AUC鈥?鈥?.653,0.685and0.639,respectively)(P鈥?lt;鈥?.001).TheKaplan鈥揗eieranalysisshowedacorrelationbetweenincreasedexosomalHOTTIPlevelsandpooroverallsurvival(OS)(logrankP鈥?lt;鈥?.001).AndunivariateandmultivariateCOXanalysisrevealedexosomalHOTTIPoverexpressionwasanindependentprognosticfactorinGCpatients(P鈥?鈥?.027).ThesefindingsdemonstratedthatexosomalHOTTIPmaybeapotentialbioMarkerforGCindiagnosisandprognosis.
Gastriccancer(GC)isahugeburdenworldwidewithhighmorbidityandhighmortality,especiallyinEasternAsia[1].Despitemanyadvancesinthediagnosisandtreatment,theprognosisofGCpatientsremainspoor,withover70%patientsultimatelydiedfromthisdisease[2].EarlydiagnosisandearlytreatmentisconducivetoimprovingprognosisofGC.ThegoldstandardforGC,endoscopyfollowedbypathologicalexamination,isinvasiveanduncomfortable[3].Bodyfluids-basedtestingisconsideredtobeasatisfactorymethodwithoutinvasion,butcurrentserumtumorbiomarkersusedforGCdiagnosis,likeCEA,CA19鈥?andCA72鈥?,havealowpositiverate[4].Theserealitieshighlightthenecessitytodiscoverothernovelbiomarkerswithhighspecificityandhighsensitivity.
Longnon-codingRNAs(lncRNAs)areagroupofnon-codingRNAswithalengthlongerthan200nucleotides[5].EvidencesshowdisorderlyregulationoflncRNAstakespartinhumandisease[6].TheHOXAtranscriptatthedistaltip(HOTTIP),whichtranscribedfromthe5鈥?tipofHOXAcluster,hasgainedgrowingattentionamongcancer-relatedlncRNAs[7].HOTTIPprimarilytargetsWDR5/MLLcomplexesacrossHOXAviadirectlybindingtheadaptorproteinWDR5,leADInghistoneH3lysine4trimethylationandgenetranscriptionofseveral5鈥?HOXAgenesandreportshaveshowedHOTTIPcanpromotecellproliferationthroughp21inhibitionormiRNAsilencing[8,9,10].Yeetal.[11]foundthatHOTTIPwassignificantlyoverexpressedinGCcelllinesanddownregulationofHOTTIPwouldinhibitcellproliferation,promotecellapoptosis,anddegradecellmigrationandinvasion.StudiesofGCtissuesrevealedthatupregulatedexpressionsofHOTTIPwasassociatedtopoordifferentiation,positivelymphnodesmetastasisandadvancedclinicalstage[12].However,nostudyofHOTTIPinGCserumhasbeenreported.
Exosomesareregardedasanentirelynewmodeofcell-to-cellcommunicationwithasizeof50-150聽nmindiameter,whicharesecretedbymanycellsandcanreflectthecharacteristicsoftheirparentcells[13,14].Exosomescontainvariousandnumerouscargos,includingenzymes,proteins,lipidsandRNAs,andpresentinperhapsallBIOLOGicalfluids,thustheyarebelievedtoparticipateinmultiplepathologicalconditions,includingcancer[15,16].FurThermore,exosomaldoublelayermembraneisanidealshelterforprotectingthecargoesfrombeingdegradedandthestabilityandlongevityoftheRNAmoleculesareidealfornon-invasivediagnosisoftumor[17].Inpreviousstudy,ourlabhadprovedtheexistenceandstabilityofexosomallncRNAinserumanddetailedtheclinicalsignificanceofexosomallncRNACRNDE-hforCRC[17].Inviewoftheseobservations,wesupposedthatGCcellsareabletogenerateandreleaseexosomesandtheexaminationofexosomalHOTTIPmayprovideanoninvasivemethodforGCdetection,patientssubpopulation,prognosispredictionandevenallowbetterunderstandingofetiopathology.Inthisstudy,wesystematicallyinvestigatedtheexpressionofexosomalHOTTIPinGCserumandtappedinformationmaybeprovidedabouttheGCstatus.ThenwefurthertestedthefeasibilitythatHOTTIPasapotentialnovelmarkerforGCdiagnosisandprognosisandcomparedthediagnosticcapabilityofHOTTIPwithtraditionalbiomarkers,includingCEA,CA19鈥?andCA72鈥?.
ResultsanddiscussionExpressionofexosomalHOTTIPanditsrelationshipwithclinicopathologicalfesturesinGCpatientsInthisstudy,wefoundthatexosomalHOTTIPcouldbedetectedinculturemediumofGCSGC7901cellline,andthelevelswereincreasedwiththeincubationtimeextended(Additional聽file聽1:FigureS1),suggestingexosomalHOTTIPwasdirectlyreleasedfromGCcells.
Then,weenrolled126GCpatientsand120normalhealthysubjectsbetweenJanuary,2011andMay,2012atQiluHospital,ShandongUniversity,China.Serumsampleswerecollectedbeforesubjectshadreceivedanysurgery,chemotherapyorradiationtherapy.Andthen,theyweresub-packedintoEppendorftubeswithoutRnase,Dnaseorpyrogenafterbeingcentrifugedat11000聽rpmfor10聽minandimmediatelyfrozenandstoredat鈭掆€?0聽掳Cuntilanalysis.LevelsofexosomalHOTTIPinthese246serumsamplesweredetectedbyRT-qPCRusingGAPDHandUBCasinternalcontrol.WefoundthatexosomalHOTTIPexpressionlevelswereevidentlyupregulatedinGCpatients(P聽鈥?.001)(Additional聽file聽2:FigureS2).ToobservethestabilityofexosomalHOTTIPinserum,wemeasuredtheirexpressionlevelsaftertreatedwithprolongedexposuretoroomtemperatureormutiplefreeze-thawcyclesandourresultsdemonstratedthatallthesetreatmenthadnoinfluenceontheirexpression(Additional聽file聽3:FigureS3).
WealsoanalyzedtheassociationbetweenexosomalHOTTIPexpressionlevelsandGCpatients鈥?clinicopathologicalfeatures.WefoundexosomalHOTTIPexpressionlevelswerepositivelyassociatedwithinvasiondepth(P鈥?鈥?.0298)andTNMstage(P鈥?lt;鈥?.001)ofGC.Conversely,therewasnosignificantcorrelationofexosomalHOTTIPexpressionwithotherclinicalfeatures,suchasage,gender,sizeoftumor,pathologicaldifferentionandlymphnodesmetastasis(allP鈥?gt;鈥?.05)(Table聽1).
Table1CorrelationbetweenexosomalHOTTIPandclinicopathologicalparametersofgastriccancer(n鈥?鈥?26)FullsizetableDiagnosticvalueofexosomalHOTTIPforGCpatientsCEA,CA19鈥?andCA72鈥?arewidelyusedinscreeningandauxiliarydiagnosinggastrointestinalmalignancies[4].WemeasuredtheirexpressionlevelsinGCserumbyelectRochemiluminescencemethodonCobasE601(RocheDiagnosticsGmbH,Germany)andconstructedROCcurvestoevaluateandcomparedthediagnosticcapacityofserumbiomarkers.Theareaunderthecurve(AUC)forexosomalHOTTIPwas0.827(Fig.聽1a),whichsignificantlyhigherthantheAUCsforCEA,CA19鈥?,CA72鈥?with0.653,0.685and0.639,respectively(P鈥?lt;鈥?.001;Fig.聽1b,candd).WecalculatedthecombinativediagnosticvalueofCEA,CA19鈥?andCA72鈥?,theAUCwas0.723(Fig.聽1e).AndtheresultsalsoshowedtheAUCforexosomalHOTTIPwassignificantlylargerthanthatfortheseunion(P鈥?lt;鈥?.001),indicatingthatexosomalHOTTIPwassuperiortotheminGCdiagnosis.WefurtherevaluatedthecombinativediagnosticvalueofCEA,CA19鈥?,CA72鈥?andexosomalHOTTIPforGC.TheAUCforthiscombinationwas0.870(Fig.聽1f).Thecombinativediagnosticcapabilitywasbetterthanoneofthesemarkersalone.Attheoptimalcut-offvalue(1.720),thesensitivityandspecificityofexosomalHOTTIPwere69.8and85.0%,respectively.Whenwesetthespecificityas95%,exosomalHOTTIPhadthehighestsensitivity(Additional聽file聽4:TableS1).TheseresultsindicatedthatexosomalHOTTIPmightbeanappropriatediagnosticmarkerforGC.
Fig.1TheROCcurvesofbiomarkers.aTheROCcurveofexosomalHOTTIP.Theareaunderthecurvewas0.827.bTheROCcurveofCEA.Theareaunderthecurvewas0.653.cTheROCcurveofCA19鈥?.Theareaunderthecurvewas0.685.dTheROCcurveofCA72鈥?.Theareaunderthecurvewas0.639.eTheROCcurveofcombineCEA,CA19鈥?andCA72鈥?.Theareaunderthecurvewas0.723.fTheROCcurveofcombineCEA,CA19鈥?,CA72鈥?andexosomalHOTTIP.Theareaunderthecurvewas0.870.P鈥?lt;鈥?.001
FullsizeimagePrognosticvalueofexosomalHOTTIPforGCpatientsEmergingevidenceshowedthatHOTTIPwasupregulatedandcorrelatedtopoorprognosisinpatientswithcancers[18].Inourstudy,Kaplan鈥揗eiermethodwasperformedtoanalyzetherelationshipsbetweenCEA,CA19鈥?,CA72鈥?andexosomalHOTTIPexpressionandoverallsurvivalrateofpatientswithGC.TheresultsdemonstratedthattherewasnosignificantrelationshipbetweenthesetraditionaltumormarkersandOS(allP聽鈥?.05;Fig.聽2a,bandc).However,patientswithhighexosomalHOTTIPexpressionhadatendencyofshorter5-yearoverallsurvival(P鈥?lt;鈥?.001;Fig.2d).
Fig.2Associationbetweentumormarkersandoverallsurvivalingastriccancer.Kaplan鈥揗eiercurvesofgastriccancerpatientsaccordingtoserumlevelsofaCEA,bCA19鈥?,cCA72鈥?anddexosomalHOTTIP,andelevelsofHOTTIPintissue
FullsizeimageTheonlinedatabaseK-Mplotter(www.kmplot.com),basingonthedetectiondatafromGCtissues,wasusedtovalidatepatientsurvivalrate.Onethousandandsixty-fivetissuesamplesofGCwereincludedinK-Mplotterdatabaseandthepatients鈥?informationswereassembledfromGEO(Affymetrixmicroarraysonly),EGAandTCGA.Themeanfollow-uptimeofthesepatientswas33聽months[19].WecomputedprognosticvalueofHOTTIPbyusingtheAffymetrixprobeatameanprobeof1564069_at,244553_atand1564070_s_atandchoosingfivedatabases(GSE14210,GSE15459,GSE22377,GSE29272,GSE51105).Finally,348patients鈥?datawereemployed.Thepatientswereclassifiedintotwogroupsonthebasisofvariousquantileexpressionsoftheproposedbiomarker.Meanwhile,thehazardratioandlogrankPvaluewerecalculated.TheresultofK-MplottersurvivalanalysisdemonstratedthatexpressionlevelsofHOTTIPwereincreasedabovetheoptimalcutoffpointin71.8%ofpatientswithGCandthesepatientshadapooroverallsurvival,withthepooledHRof1.63(95%CI鈥?鈥?.19鈥?.23,P鈥?鈥?.0022)(Fig.聽2e),whichsupportedourconclusion.
Coxproportionalhazardsmodelwerecalculatedtoidentifyindependentprognosticfactors.UnivariateanalysisindicatedthatadvancedTNMstage(HR鈥?鈥?.000,95%CI鈥?鈥?.225鈥?.264,P鈥?鈥?.006)andhighexosomalHOTTIPlevels(HR鈥?鈥?.352,95%CI鈥?鈥?.460鈥?.791,P鈥?lt;鈥?.001)werepoorprognosticfactors(Additionalfile3:FigureS3).ThenfeatureswithavalueofP鈥?lt;鈥?.05inunivariateanalysiswereputintomultivariateanalysis.TheanalysisshowedthathighexosomalHOTTIPlevelswereindependentfactorsassociatedwithpoorOSofGC(HR鈥?鈥?.037,95%CI鈥?鈥?.085鈥?.823,P鈥?鈥?.027)(Additional聽file聽5:TableS2).
ConclusionsOurstudyrevealesthepresenceofHOTTIPinexosomesisolatedfromserumsamplesofGCpatients.WefindthatexosomalHOTTIPisupregulatedintheserumofGCpatientsanditmaybeabetterbiomarkerforGCindiagnosisthanCEA,CA19鈥?andCA72鈥?.Furthermore,exosomalHOTTIPexpressionlevelsisidentifiedasanindependentfactorforpoorprognosisinGCpatients.Inconclusion,exosomallongnoncodingRNAHOTTIPmaybeapotentialbiomarkerforgastriccancerindiagnosisandprognosis.
AbbreviationsCA19鈥?:Carbohydrateantigen19鈥?
CA72鈥?:Cancerantigen72鈥?
CEA:Carcinoembryonicantigen
GAPDH:Glyceraldehyde-3-phosphatedehydrogenase
Gastriccancer
HOTTIP:TheHOXAtranscriptatthedistaltip
UBC:UbiquitinC
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FundingThisstudywassupportedbyShandongKeyResearchandDevelopmentProgram(2016GSF201122,2016CYJS01A02),NaturalScienceFoundationofShandongProvince(ZR2017MH044),FundamentalResearchFundsofShandongUniversity(2014QLKY03),NationalNaturalScienceFoundationofChina(81601846),andTaishanScholarFoundation.
AvailabilityofdataandmaterialsTheauthorsdeclarethatdatasetssupportingtheconclusionsofthisstudyareavailablewithinthemanuscriptanditssupplementaryinformationfiles.
AuthorinformationAuthornotesAffiliationsDepartmentofClinicalLaboratory,QiluHospital,ShandongUniversity,107WenhuaXiRoad,Jinan,Shandong,250012,ChinaRuiZhao,聽XinZhang,聽YongmeiYang,聽XinZheng,聽XiaohuiLi,聽YingjieLiu聽聽YiZhangDepartmentofClinicalLaboratory,ShandongProvincialThirdHospital,Jinan,Shandong,250012,ChinaYanliZhangAuthorsRuiZhaoViewauthorpublicationsYoucanalsosearchforthisauthorinPubMedGoogleScholarYanliZhangViewauthorpublicationsYoucanalsosearchforthisauthorinPubMedGoogleScholarXinZhangViewauthorpublicationsYoucanalsosearchforthisauthorinPubMedGoogleScholarYongmeiYangViewauthorpublicationsYoucanalsosearchforthisauthorinPubMedGoogleScholarXinZhengViewauthorpublicationsYoucanalsosearchforthisauthorinPubMedGoogleScholarXiaohuiLiViewauthorpublicationsYoucanalsosearchforthisauthorinPubMedGoogleScholarYingjieLiuViewauthorpublicationsYoucanalsosearchforthisauthorinPubMedGoogleScholarYiZhangViewauthorpublicationsYoucanalsosearchforthisauthorinPubMedGoogleScholarContributionsXZandYZconductedthestudydesign;RZ,YZandYYperformedexperimentsandanalyzedthedata.YZ,XZ,XZ,XLandYLcollectedthesamples;RZ,YZandYYdraftedthemanuscript.Alltheauthorsreviewedandapprovedthefinalmanuscript.
CorrespondingauthorCorrespondencetoYiZhang.
EthicsdeclarationsEthicsapprovalandconsenttoparticipateThisstudywasreviewedandapprovedbytheEthicsCommitteeofQiluHospitalofShandongUniversity,andallpatientsprovidedwritteninformedconsent.
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