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Cycle Sequence Reactions For Large Insert Plasmid Templates

Thefollowingdye-labeledterminatorreactionchemistrieshavebeendesignedtobalanceconservationofreagentswiththeresultingsequenceproductsignalstrength.WhencoupledwithBACPACResourcetemplatepreparation,N-freereadlengthsof>400ntscanbeexpected.Moreemphasiscanbeplacedonreagentconservationbyfurthervolumereductionordilution;oronsequenceproductsignalstrengthbyincreasingthereactionsize.

CycleSequenceChemistryConditions:

Chemistry3ReactionSize4FinalVol(ul)PrimerVol(10pmol/ul)ReactionMixvol(ul)Templatevol(ul)
ABIdRhodterm1.25x2511014
ABIBDterm0.75x15168

CycleSequenceConditions:

1)Initialdenaturationstep:96oC4min.2)denaturation:96oC10sec.3)annealing:50oC10sec.4)extension:60oC4min.runsteps2-4for100cycles.5)hold:4-10oC.

PrimersUsefulForBACandPACVectors:

T7.29:5’gccgctAATacgactcactatagggagag29merT7:5’taatacgactcactataggg20mergSP6:5’gttttttgcgatctgccgtttc22mer


3StockABIReadyReactionmixesaresupplementedwith4mMMgCl24ReferstoABI1x(20ul)reaction5Annealingtempcanbeadjusted,basedonTmofprimersused

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